The American Multi-modal Energy System: Model Development with Structural and Behavioral Analysis using Hetero-functional Graph Theory

In the 21st century, infrastructure is playing an ever greater role in our daily lives. Presidential Policy Directive 21 emphasizes that infrastructure is critical to public confidence, the nation\u27s safety, and its well-being. With global climate change demanding a host of changes across at least four critical energy infrastructures: the electric grid, the natural gas system, the oil system, and the coal system, it is imperative to study models of these infrastructures to guide future policies and infrastructure developments. Traditionally these energy systems have been studied independently, usually in their own fields of study. Therefore, infrastructure datasets often lack the structural and dynamic elements to describe the interdependencies with other infrastructures. This thesis refers to the integration of the aforementioned energy infrastructures into a singular system-of-systems within the context of the United States of America as the American Multi-modal Energy System (AMES). This work develops an open-source structural and behavioral model of the AMES using Hetero-functional Graph Theory (HFGT), a data-driven approach, and model-based systems engineering practices in the following steps. First, the HFGT toolbox code is made available on GitHub and advanced to produce HFGs of systems on the scale of the AMES using the languages Python and Julia. Second, the analytical insights that HFGs can provide relative to formal graphs are investigated through structural analysis of the American Electric Power System which demonstrates how HFGs are better equipped to describe changes in system behavior. Third, a reference architecture of the AMES is developed, providing a standardized foundation to develop future models of the AMES. Fourth, the AMES reference architecture is instantiated into a structural model from which structural properties are investigated. Finally, a physically informed Weighted Least Squares Error Hetero-functional Graph State Estimation analysis of the AMES\u27 socio-economic behavior is implemented to investigate the behavior of the AMES with asset level granularity. These steps provide a reproducible and reusable structural and behavioral model of the AMES for guiding future policies and infrastructural developments to critical energy infrastructures

Coronal Heating as Determined by the Solar Flare Frequency Distribution Obtained by Aggregating Case Studies

Flare frequency distributions represent a key approach to addressing one of the largest problems in solar and stellar physics: determining the mechanism that counter-intuitively heats coronae to temperatures that are orders of magnitude hotter than the corresponding photospheres. It is widely accepted that the magnetic field is responsible for the heating, but there are two competing mechanisms that could explain it: nanoflares or Alfv\'en waves. To date, neither can be directly observed. Nanoflares are, by definition, extremely small, but their aggregate energy release could represent a substantial heating mechanism, presuming they are sufficiently abundant. One way to test this presumption is via the flare frequency distribution, which describes how often flares of various energies occur. If the slope of the power law fitting the flare frequency distribution is above a critical threshold, $\alpha=2$ as established in prior literature, then there should be a sufficient abundance of nanoflares to explain coronal heating. We performed $>$600 case studies of solar flares, made possible by an unprecedented number of data analysts via three semesters of an undergraduate physics laboratory course. This allowed us to include two crucial, but nontrivial, analysis methods: pre-flare baseline subtraction and computation of the flare energy, which requires determining flare start and stop times. We aggregated the results of these analyses into a statistical study to determine that $\alpha = 1.63 \pm 0.03$. This is below the critical threshold, suggesting that Alfv\'en waves are an important driver of coronal heating.Comment: 1,002 authors, 14 pages, 4 figures, 3 tables, published by The Astrophysical Journal on 2023-05-09, volume 948, page 7

Reproducibility of fluorescent expression from engineered biological constructs in E. coli

We present results of the first large-scale interlaboratory study carried out in synthetic biology, as part of the 2014 and 2015 International Genetically Engineered Machine (iGEM) competitions. Participants at 88 institutions around the world measured fluorescence from three engineered constitutive constructs in E. coli. Few participants were able to measure absolute fluorescence, so data was analyzed in terms of ratios. Precision was strongly related to fluorescent strength, ranging from 1.54-fold standard deviation for the ratio between strong promoters to 5.75-fold for the ratio between the strongest and weakest promoter, and while host strain did not affect expression ratios, choice of instrument did. This result shows that high quantitative precision and reproducibility of results is possible, while at the same time indicating areas needing improved laboratory practices.Peer reviewe

Open data from the first and second observing runs of Advanced LIGO and Advanced Virgo

Advanced LIGO and Advanced Virgo are monitoring the sky and collecting gravitational-wave strain data with sufficient sensitivity to detect signals routinely. In this paper we describe the data recorded by these instruments during their first and second observing runs. The main data products are gravitational-wave strain time series sampled at 16384 Hz. The datasets that include this strain measurement can be freely accessed through the Gravitational Wave Open Science Center at http://gw-openscience.org, together with data-quality information essential for the analysis of LIGO and Virgo data, documentation, tutorials, and supporting software